Variant report

Variant	rs2699704
Chromosome Location	chr7:118427202-118427203
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1320842	0.81[AMR][1000 genomes]
rs1919914	0.81[AMR][1000 genomes]
rs2204271	0.90[AMR][1000 genomes]
rs2590600	0.81[AMR][1000 genomes]
rs2689716	0.81[AMR][1000 genomes]
rs2689717	0.81[AMR][1000 genomes]
rs2699703	0.81[AMR][1000 genomes]
rs2699773	0.81[AMR][1000 genomes]
rs2699774	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831109	chr7:118300593-118501778	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118426600-118428000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:118426600-118428000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:118427200-118429200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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