Variant report

Variant	rs2699818
Chromosome Location	chr7:26450219-26450220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26442296..26446078-chr7:26448777..26452832,3	K562	blood:
2	chr1:109097103..109098848-chr7:26449846..26452157,2	MCF-7	breast:
3	chr7:26448155..26450355-chr7:26451768..26453490,2	K562	blood:
4	chr7:26449196..26451207-chr7:26451616..26453577,2	MCF-7	breast:
5	chr7:26448654..26450705-chr7:26456619..26460704,3	K562	blood:
6	chr7:26444175..26445872-chr7:26449733..26452711,2	MCF-7	breast:
7	chr7:26435558..26440454-chr7:26449567..26452486,5	MCF-7	breast:
8	chr7:26442296..26445236-chr7:26449930..26452832,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10229953	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1529150	1.00[ASN][1000 genomes]
rs1881721	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525762	1.00[ASN][1000 genomes]
rs2698730	1.00[ASN][1000 genomes]
rs2698731	1.00[ASN][1000 genomes]
rs2698733	1.00[ASN][1000 genomes]
rs2699820	1.00[ASN][1000 genomes]
rs2699821	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2699818	STK31	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26439000-26452200	Weak transcription	Ovary	ovary
2	chr7:26439000-26452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:26439000-26453000	Weak transcription	Lung	lung
4	chr7:26439800-26453000	Weak transcription	Pancreas	Pancrea
5	chr7:26440800-26460200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:26444200-26452800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:26444600-26453000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:26446000-26471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:26446800-26459800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:26449000-26450600	Enhancers	Fetal Lung	lung
11	chr7:26449400-26450400	Enhancers	Fetal Stomach	stomach
12	chr7:26449800-26453000	Weak transcription	K562	blood
13	chr7:26450000-26450400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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