Variant report

Variant	rs2701964
Chromosome Location	chr11:102493881-102493882
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1320659	0.89[AFR][1000 genomes]
rs1630876	0.84[AFR][1000 genomes]
rs1711406	0.86[AFR][1000 genomes]
rs1711407	0.95[AFR][1000 genomes]
rs1784401	0.84[AFR][1000 genomes]
rs1784402	0.88[AFR][1000 genomes]
rs1784404	0.89[AFR][1000 genomes]
rs1784414	0.84[AFR][1000 genomes]
rs1940046	0.90[AFR][1000 genomes]
rs1940047	0.90[AFR][1000 genomes]
rs1940049	0.90[AFR][1000 genomes]
rs1940050	0.90[AFR][1000 genomes]
rs2009487	0.90[AFR][1000 genomes]
rs2009489	0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs2009659	0.89[AFR][1000 genomes]
rs2245697	0.97[AFR][1000 genomes]
rs2245803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2245897	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs2459474	0.97[AFR][1000 genomes]
rs2459476	0.97[AFR][1000 genomes]
rs2459477	0.90[AFR][1000 genomes]
rs2459478	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2464354	0.89[AFR][1000 genomes]
rs2464355	0.86[AFR][1000 genomes]
rs2464356	0.90[AFR][1000 genomes]
rs2464357	0.90[AFR][1000 genomes]
rs2464358	0.90[AFR][1000 genomes]
rs2464359	0.90[AFR][1000 genomes]
rs2464360	0.90[AFR][1000 genomes]
rs2509022	0.89[AFR][1000 genomes]
rs2509023	0.87[YRI][hapmap];0.97[AFR][1000 genomes]
rs2509024	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs2701965	0.90[AFR][1000 genomes]
rs2701966	0.96[AFR][1000 genomes]
rs2701967	0.89[AFR][1000 genomes]
rs2701968	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs2701969	0.89[AFR][1000 genomes]
rs2701970	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2701971	0.87[AFR][1000 genomes]
rs2701973	0.84[AFR][1000 genomes]
rs2701974	0.88[AFR][1000 genomes]
rs2701975	0.91[AFR][1000 genomes]
rs28442032	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2846344	0.89[AFR][1000 genomes]
rs2846345	0.89[AFR][1000 genomes]
rs2846346	0.88[AFR][1000 genomes]
rs2846347	0.90[AFR][1000 genomes]
rs7116246	0.89[AFR][1000 genomes]
rs948138	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102487000-102494800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:102487000-102497000	Weak transcription	HSMMtube	muscle
3	chr11:102491600-102496800	Enhancers	HepG2	liver
4	chr11:102492200-102497200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:102492800-102496000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:102493600-102494200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:102493800-102495800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:102493800-102501600	Weak transcription	Fetal Intestine Small	intestine

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