Variant report

Variant	rs270283
Chromosome Location	chr6:153727197-153727198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs270281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270284	0.94[ASN][1000 genomes]
rs270288	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs270289	0.91[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs270291	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs270295	0.89[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916080	chr6:153650242-153881059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv915884	chr6:153717053-153979225	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:153726400-153728200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:153726600-153727600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:153726600-153727800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:153726600-153729600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:153726800-153727200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:153726800-153728000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:153727000-153727400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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