Variant report

Variant	rs2703097
Chromosome Location	chr7:128893319-128893320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128891593..128894019-chr7:128897274..128899185,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10224011	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10954227	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533541	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402951	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2566878	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2566879	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2566884	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2566887	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694578	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694586	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2694589	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694590	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2718094	0.87[AFR][1000 genomes]
rs2718098	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517061	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731570	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6467244	1.00[ASN][1000 genomes]
rs6969620	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779572	1.00[ASN][1000 genomes]
rs7787531	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3349195	chr7:128887559-128918489	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv525482	chr7:128890812-129045191	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128902200	Weak transcription	Gastric	stomach
2	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
3	chr7:128866400-128899000	Weak transcription	Ovary	ovary
4	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
7	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:128878800-128897000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:128881000-128898800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:128882000-128899600	Weak transcription	Left Ventricle	heart
11	chr7:128884800-128898800	Weak transcription	Primary T cells from cord blood	blood
12	chr7:128885600-128898600	Weak transcription	Brain Germinal Matrix	brain
13	chr7:128887200-128898600	Weak transcription	NHEK	skin
14	chr7:128888200-128895800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:128890200-128895800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:128890800-128897200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:128891200-128897000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:128892400-128897200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:128892400-128898600	Weak transcription	Brain Anterior Caudate	brain
20	chr7:128892600-128914200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:128892800-128897000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:128893200-128899000	Weak transcription	Psoas Muscle	Psoas

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