Variant report

Variant	rs2703583
Chromosome Location	chr15:57345641-57345642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57344217..57346725-chr15:57347528..57349236,2	K562	blood:
2	chr15:57344697..57346237-chr15:57349958..57351600,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2585098	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2585108	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57311000-57347000	Weak transcription	Fetal Intestine Large	intestine
2	chr15:57324400-57349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:57324600-57355800	Weak transcription	Primary B cells from cord blood	blood
4	chr15:57324600-57398600	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:57324800-57347200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:57324800-57349400	Weak transcription	Right Ventricle	heart
7	chr15:57328200-57353600	Weak transcription	Pancreas	Pancrea
8	chr15:57328400-57345800	Weak transcription	Left Ventricle	heart
9	chr15:57328600-57355000	Weak transcription	Dnd41	blood
10	chr15:57329800-57349600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:57329800-57351400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:57332000-57346000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:57332000-57349200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:57332000-57349400	Weak transcription	Thymus	Thymus
15	chr15:57332000-57355800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr15:57332800-57345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:57333400-57349400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:57334000-57346000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:57334000-57346200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:57335000-57347400	Weak transcription	Lung	lung
21	chr15:57335400-57349000	Weak transcription	NHEK	skin
22	chr15:57336600-57349200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:57336600-57371800	Weak transcription	K562	blood
24	chr15:57336800-57346000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:57336800-57349000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:57337200-57345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:57337400-57349200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:57337600-57351200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:57338200-57350000	Weak transcription	Fetal Heart	heart
30	chr15:57339000-57345800	Weak transcription	Psoas Muscle	Psoas
31	chr15:57339200-57350000	Weak transcription	HSMM	muscle
32	chr15:57339600-57349800	Weak transcription	Primary T cells from cord blood	blood
33	chr15:57339600-57349800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:57339600-57355600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:57339800-57361600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:57340200-57372600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:57341000-57347000	Enhancers	Brain Substantia Nigra	brain
38	chr15:57341600-57346000	Weak transcription	Fetal Stomach	stomach
39	chr15:57341600-57348800	Weak transcription	Osteobl	bone
40	chr15:57341800-57345800	Weak transcription	Fetal Thymus	thymus
41	chr15:57341800-57346000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:57341800-57346400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:57341800-57349000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:57341800-57349400	Weak transcription	NH-A	brain
45	chr15:57341800-57349800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:57342000-57349000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr15:57342400-57346000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:57342400-57346400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:57343800-57363400	Weak transcription	Aorta	Aorta
50	chr15:57344000-57346200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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