Variant report

Variant	rs2703625
Chromosome Location	chr15:57404145-57404146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57403095..57404934-chr15:57406973..57408733,2	K562	blood:
2	chr15:57397844..57400555-chr15:57402758..57405029,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2243575	0.87[AFR][1000 genomes]
rs2566847	0.81[AFR][1000 genomes]
rs2585085	0.87[AFR][1000 genomes]
rs2585092	0.88[AFR][1000 genomes]
rs2585095	0.87[AFR][1000 genomes]
rs2585101	0.87[AFR][1000 genomes]
rs2585109	0.81[AFR][1000 genomes]
rs2593213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2593214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2593227	0.88[AFR][1000 genomes]
rs2615234	0.87[AFR][1000 genomes]
rs2703609	0.81[AFR][1000 genomes]
rs2733169	0.81[AFR][1000 genomes]
rs2733175	0.81[AFR][1000 genomes]
rs2733190	0.88[AFR][1000 genomes]
rs2733308	0.94[AFR][1000 genomes]
rs2733325	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57353800-57406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:57372600-57404200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:57372800-57410200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr15:57374800-57409600	Weak transcription	Osteobl	bone
5	chr15:57374800-57414600	Weak transcription	Fetal Kidney	kidney
6	chr15:57376200-57406000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:57381000-57412400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:57381200-57404400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:57381200-57409400	Weak transcription	NHLF	lung
10	chr15:57382600-57423800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:57382800-57404400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:57382800-57404400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:57382800-57419600	Weak transcription	K562	blood
14	chr15:57384200-57409200	Weak transcription	Brain Germinal Matrix	brain
15	chr15:57384600-57404400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:57384600-57405600	Weak transcription	Brain Anterior Caudate	brain
17	chr15:57384600-57410400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:57385200-57406200	Weak transcription	HepG2	liver
19	chr15:57386200-57410200	Weak transcription	Ovary	ovary
20	chr15:57386400-57426600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr15:57386600-57424600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:57386800-57405600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:57387000-57404400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:57387000-57406400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:57387000-57430000	Weak transcription	Placenta	Placenta
26	chr15:57387200-57425400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:57387400-57406000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:57387400-57406200	Weak transcription	HUVEC	blood vessel
29	chr15:57387600-57409400	Weak transcription	Dnd41	blood
30	chr15:57387600-57442400	Weak transcription	Fetal Intestine Large	intestine
31	chr15:57388000-57404200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:57388200-57406200	Weak transcription	A549	lung
33	chr15:57389000-57404400	Weak transcription	HSMM	muscle
34	chr15:57390200-57409400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:57391200-57404400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:57391200-57410200	Weak transcription	HMEC	breast
37	chr15:57391400-57409600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:57391800-57404400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:57392600-57406000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:57392800-57406000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:57393800-57404400	Weak transcription	Thymus	Thymus
42	chr15:57394400-57406000	Weak transcription	Lung	lung
43	chr15:57397800-57416600	Weak transcription	Fetal Stomach	stomach
44	chr15:57398000-57415800	Weak transcription	Fetal Intestine Small	intestine
45	chr15:57399000-57404400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:57399400-57406000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:57399400-57406200	Weak transcription	Adipose Nuclei	Adipose
48	chr15:57399400-57409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:57399400-57409600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:57399400-57410000	Weak transcription	NH-A	brain

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