Variant report

Variant	rs2704282
Chromosome Location	chr7:18644378-18644379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13229874	0.82[YRI][hapmap]
rs2023651	0.83[JPT][hapmap]
rs2254859	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2285431	0.80[JPT][hapmap]
rs2519889	0.82[JPT][hapmap]
rs2695026	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2704280	0.89[JPT][hapmap]
rs2704284	0.82[JPT][hapmap]
rs3213616	0.86[JPT][hapmap]
rs6963748	0.82[YRI][hapmap]
rs801537	0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18621200-18646800	Weak transcription	HSMM	muscle
2	chr7:18633000-18645400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:18633800-18647000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:18633800-18650000	Weak transcription	Aorta	Aorta
5	chr7:18637800-18647200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:18638000-18645200	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:18638400-18647000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:18640000-18645200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr7:18640000-18646000	ZNF genes & repeats	Primary B cells from cord blood	blood
10	chr7:18640200-18646000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:18640200-18646000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr7:18640400-18645200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:18641000-18645400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:18641200-18670800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:18641400-18644400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:18641400-18644800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:18641400-18644800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:18641400-18663400	Weak transcription	Brain Angular Gyrus	brain
19	chr7:18641400-18687600	Weak transcription	Fetal Heart	heart
20	chr7:18641600-18644400	Weak transcription	HSMMtube	muscle
21	chr7:18641600-18644400	Weak transcription	NH-A	brain
22	chr7:18642600-18644400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:18643400-18645200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr7:18643800-18645400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr7:18644000-18644400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:18644000-18644800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:18644000-18645200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:18644000-18645200	Strong transcription	Left Ventricle	heart
29	chr7:18644000-18645400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr7:18644000-18645600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
31	chr7:18644000-18645600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:18644000-18646000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:18644200-18645400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr7:18644200-18645400	ZNF genes & repeats	Brain Hippocampus Middle	brain

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