Variant report

Variant	rs2704762
Chromosome Location	chr12:63194756-63194757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:62993432..63001334-chr12:63185505..63196473,30	MCF-7	breast:
2	chr12:62996654..62999320-chr12:63190333..63195111,6	MCF-7	breast:
3	chr12:63001464..63003461-chr12:63192756..63195613,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs163690	1.00[AMR][1000 genomes]
rs2663960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63175200-63206800	Weak transcription	Pancreas	Pancrea
2	chr12:63180400-63199000	Weak transcription	Aorta	Aorta
3	chr12:63181200-63197800	Weak transcription	Spleen	Spleen
4	chr12:63181200-63198200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:63181200-63200400	Weak transcription	Lung	lung
6	chr12:63182600-63195200	Weak transcription	Fetal Stomach	stomach
7	chr12:63186400-63195200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:63186400-63198000	Weak transcription	Ovary	ovary
9	chr12:63187800-63196800	Weak transcription	Brain Angular Gyrus	brain
10	chr12:63187800-63205200	Weak transcription	K562	blood
11	chr12:63187800-63206400	Weak transcription	Osteobl	bone
12	chr12:63187800-63206800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr12:63187800-63211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr12:63188000-63194800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr12:63188000-63198800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:63188000-63206800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr12:63188600-63197000	Weak transcription	Brain Substantia Nigra	brain
18	chr12:63188600-63197600	Weak transcription	Liver	Liver
19	chr12:63190000-63196400	Strong transcription	HepG2	liver
20	chr12:63191600-63195200	Weak transcription	Brain Hippocampus Middle	brain
21	chr12:63191800-63195200	Weak transcription	Fetal Intestine Large	intestine
22	chr12:63192000-63195400	Weak transcription	Right Ventricle	heart
23	chr12:63192600-63195400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:63192600-63195400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr12:63192800-63195600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr12:63192800-63211400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr12:63193000-63196200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr12:63193000-63201400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:63193400-63194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr12:63193400-63194800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr12:63193400-63206800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr12:63193600-63196400	Strong transcription	Fetal Intestine Small	intestine
33	chr12:63193800-63194800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:63193800-63195400	Weak transcription	Gastric	stomach
35	chr12:63194000-63198800	Weak transcription	GM12878-XiMat	blood
36	chr12:63194200-63194800	Enhancers	A549	lung
37	chr12:63194400-63194800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:63194400-63195400	Weak transcription	Placenta	Placenta
39	chr12:63194400-63196000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr12:63194600-63194800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr12:63194600-63194800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr12:63194600-63195000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr12:63194600-63195000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr12:63194600-63195000	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr12:63194600-63195000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr12:63194600-63195000	Enhancers	Adipose Nuclei	Adipose
47	chr12:63194600-63195000	Flanking Active TSS	NHDF-Ad	bronchial
48	chr12:63194600-63195400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:63194600-63195600	Strong transcription	Brain Cingulate Gyrus	brain
50	chr12:63194600-63195800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links