Variant report

Variant	rs2707429
Chromosome Location	chr7:70825765-70825766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11972878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527295	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70814800-70828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70814800-70829400	Weak transcription	Ovary	ovary
3	chr7:70815000-70826000	Weak transcription	Fetal Heart	heart
4	chr7:70818800-70828800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:70819000-70828600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70821400-70826600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:70823000-70828600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:70825600-70829000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links