Variant report

Variant	rs2707443
Chromosome Location	chr7:70652076-70652077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10272163	0.85[GIH][hapmap]
rs1636481	0.85[GIH][hapmap]
rs1796057	1.00[JPT][hapmap]
rs1796058	0.96[ASN][1000 genomes]
rs1796088	0.82[CHB][hapmap]
rs1796089	0.85[GIH][hapmap]
rs2158733	0.85[GIH][hapmap]
rs7793651	1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70649400-70652200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:70649600-70652800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:70650600-70652400	Enhancers	Fetal Lung	lung
4	chr7:70651200-70656200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70651400-70652400	Enhancers	Ovary	ovary
6	chr7:70651600-70652800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:70651600-70663600	Weak transcription	Fetal Heart	heart
8	chr7:70651600-70666600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:70651800-70653800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:70651800-70654000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:70651800-70654400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:70651800-70656000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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