Variant report
| Variant | rs2708413 |
|---|---|
| Chromosome Location | chr12:40584921-40584922 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1086487 | 1.00[AFR][1000 genomes] |
| rs2624245 | 1.00[AFR][1000 genomes] |
| rs2624247 | 1.00[AFR][1000 genomes] |
| rs2624248 | 1.00[AFR][1000 genomes] |
| rs2708434 | 1.00[AFR][1000 genomes] |
| rs2708448 | 1.00[AFR][1000 genomes] |
| rs2708452 | 1.00[AFR][1000 genomes] |
| rs2708459 | 1.00[AFR][1000 genomes] |
| rs476592 | 1.00[AFR][1000 genomes] |
| rs478527 | 1.00[AFR][1000 genomes] |
| rs489044 | 1.00[AFR][1000 genomes] |
| rs511097 | 1.00[AFR][1000 genomes] |
| rs518159 | 1.00[AFR][1000 genomes] |
| rs522895 | 1.00[AFR][1000 genomes] |
| rs525931 | 1.00[AFR][1000 genomes] |
| rs530071 | 1.00[AFR][1000 genomes] |
| rs545434 | 1.00[AFR][1000 genomes] |
| rs546083 | 1.00[AFR][1000 genomes] |
| rs578572 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv558596 | chr12:40413698-40591117 | Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045516 | chr12:40543200-40589557 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
| 3 | nsv1044685 | chr12:40574460-40771612 | Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40584400-40586000 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
