Variant report

Variant	rs271037
Chromosome Location	chr11:92735551-92735552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11823194	1.00[JPT][hapmap]
rs271029	1.00[ASN][1000 genomes]
rs271030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271036	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271040	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv820151	chr11:92718283-92738795	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048275	chr11:92719681-92795212	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs271037	BCLAF1	trans	lymphoblastoid	RTeQTL
rs271037	CUL3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92732400-92736000	Enhancers	Hela-S3	cervix
2	chr11:92732800-92735800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:92733400-92738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:92734000-92735800	Enhancers	HMEC	breast
5	chr11:92734200-92738600	Weak transcription	NHLF	lung
6	chr11:92734600-92738400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:92734600-92738400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:92734600-92738400	Weak transcription	HSMM	muscle
9	chr11:92734600-92738400	Weak transcription	NH-A	brain
10	chr11:92734600-92738400	Weak transcription	NHDF-Ad	bronchial
11	chr11:92734800-92738400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:92735000-92737200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:92735000-92738400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:92735000-92738400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:92735000-92738400	Weak transcription	NHEK	skin
16	chr11:92735200-92738400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:92735400-92738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links