Variant report

Variant	rs2710561
Chromosome Location	chr4:126278758-126278759
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6850220	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830051	chr4:126234895-126403426	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126242800-126279600	Weak transcription	Left Ventricle	heart
2	chr4:126265200-126281200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:126266400-126279200	Weak transcription	Fetal Lung	lung
4	chr4:126268200-126279400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:126272800-126278800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:126272800-126280800	Weak transcription	NHDF-Ad	bronchial
7	chr4:126274000-126281000	Weak transcription	Aorta	Aorta
8	chr4:126274000-126288800	Weak transcription	Fetal Stomach	stomach
9	chr4:126274000-126289000	Weak transcription	Fetal Brain Male	brain
10	chr4:126274200-126281000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:126274200-126289400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:126274600-126278800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:126275600-126279200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:126276400-126280200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:126276600-126282200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:126276800-126289800	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:126277000-126280000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:126277000-126280000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:126277400-126278800	Weak transcription	Brain Substantia Nigra	brain
20	chr4:126277400-126280800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:126277400-126288800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:126277600-126281200	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:126277800-126279400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr4:126277800-126279600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr4:126278200-126281800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr4:126278400-126279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr4:126278600-126278800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr4:126278600-126278800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr4:126278600-126279000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr4:126278600-126279000	Enhancers	Colon Smooth Muscle	Colon
31	chr4:126278600-126279600	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr4:126278600-126281800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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