Variant report

Variant	rs2712336
Chromosome Location	chr3:113634952-113634953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2566967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2632244	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7433560	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv877351	chr3:113450495-113637424	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1013746	chr3:113460162-113646657	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113618200-113641800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:113619200-113652600	Weak transcription	Pancreas	Pancrea
3	chr3:113626200-113642200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:113626600-113641800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:113631600-113666200	Weak transcription	Esophagus	oesophagus
6	chr3:113631800-113637000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:113632000-113666000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:113632200-113656200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:113633600-113635000	Weak transcription	Liver	Liver
10	chr3:113634000-113635000	Weak transcription	NHEK	skin
11	chr3:113634600-113635800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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