Variant report

Variant	rs2712997
Chromosome Location	chr3:109984480-109984481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12485561	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461759	1.00[ASN][1000 genomes]
rs1461762	1.00[ASN][1000 genomes]
rs2399303	1.00[ASN][1000 genomes]
rs2399304	1.00[ASN][1000 genomes]
rs2399305	1.00[ASN][1000 genomes]
rs2614696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712994	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712998	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2895368	1.00[ASN][1000 genomes]
rs6790010	1.00[ASN][1000 genomes]
rs9840572	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9840950	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9862390	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877334	chr3:109983269-110044601	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109981800-109985200	Enhancers	Ovary	ovary
2	chr3:109982200-109984600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:109983400-109984800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:109983800-109984600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:109983800-109984600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:109983800-109985000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:109983800-109985200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:109983800-109985600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:109984000-109985400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:109984200-109984600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:109984200-109985000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr3:109984200-109990600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:109984400-109985000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:109984400-109986800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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