Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56533157..56539020-chr15:56544541..56548879,7	K562	blood:

Variant related genes	Relation type
ENSG00000181827	Chromatin interaction
ENSG00000151575	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12905899	0.82[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs12911427	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs1372753	0.87[CHB][hapmap]
rs1549452	0.81[CEU][hapmap]
rs16976734	0.83[CHB][hapmap]
rs17819438	0.82[CEU][hapmap]
rs2119937	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs2303441	0.82[CEU][hapmap]
rs2460650	0.81[CEU][hapmap]
rs2682049	0.97[ASN][1000 genomes]
rs2682051	0.81[CEU][hapmap]
rs2682054	0.82[CEU][hapmap];0.97[ASN][1000 genomes]
rs2713924	0.82[CEU][hapmap]
rs2713933	0.82[CEU][hapmap]
rs2713936	0.81[CEU][hapmap]
rs2713941	0.82[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs2718934	0.81[CEU][hapmap]
rs2718941	0.82[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs4310791	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs4310792	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4774232	0.81[CEU][hapmap]
rs4774856	0.87[CHB][hapmap]
rs7496025	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs795790	0.96[CEU][hapmap]
rs8024031	0.87[CHB][hapmap]
rs9672886	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56538200-56546600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56538800-56546400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:56538800-56546600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:56546000-56546800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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