Variant report

Variant	rs2714879
Chromosome Location	chr7:17963039-17963040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:17960038..17961938-chr7:17962432..17964093,2	MCF-7	breast:
2	chr7:17962709..17964223-chr7:17978697..17980750,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071189	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3800961	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021524	chr7:17251148-17963307	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv533938	chr7:17254118-18040301	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv830913	chr7:17848480-18034218	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1026629	chr7:17862477-18362404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1025023	chr7:17865796-18357630	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
9	nsv887808	chr7:17920613-18150005	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1018517	chr7:17926468-18127372	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv606357	chr7:17938491-18375245	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:17911400-17977400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:17952800-17964400	Weak transcription	Gastric	stomach
3	chr7:17953200-17964600	Weak transcription	Esophagus	oesophagus
4	chr7:17955000-17977400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:17955200-17964000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:17955200-17966200	Weak transcription	Pancreas	Pancrea
7	chr7:17955400-17967000	Weak transcription	Lung	lung
8	chr7:17955400-17973000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:17959000-17971400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:17959600-17972800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:17960200-17964400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:17960800-17963400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr7:17960800-17964400	Weak transcription	Psoas Muscle	Psoas
14	chr7:17960800-17965000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr7:17960800-17965600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:17960800-17967800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:17960800-17970200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr7:17961000-17964200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:17961000-17971200	Weak transcription	Primary T cells from cord blood	blood
20	chr7:17961200-17963400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:17961200-17963400	Enhancers	Colon Smooth Muscle	Colon
22	chr7:17961600-17964200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:17961800-17963200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:17961800-17977400	Weak transcription	Brain Angular Gyrus	brain
25	chr7:17961800-17978800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:17962000-17963200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:17962000-17967600	Weak transcription	Small Intestine	intestine
28	chr7:17962000-17970200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr7:17962000-17970200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:17962000-17973400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:17962000-17975800	Weak transcription	Hela-S3	cervix
32	chr7:17962200-17964000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:17962200-17973200	Weak transcription	Primary B cells from cord blood	blood
34	chr7:17962200-17977400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:17962400-17963200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:17962400-17963200	Weak transcription	Fetal Heart	heart
37	chr7:17962400-17963400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr7:17962400-17964400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr7:17962400-17978600	Weak transcription	Aorta	Aorta
40	chr7:17962600-17964200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr7:17962800-17963400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr7:17962800-17963400	Enhancers	Rectal Smooth Muscle	rectum
43	chr7:17962800-17963400	Enhancers	Right Ventricle	heart
44	chr7:17962800-17963400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr7:17962800-17963600	Enhancers	H1 Cell Line	embryonic stem cell
46	chr7:17962800-17964400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr7:17962800-17964400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr7:17962800-17965400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr7:17962800-17965400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr7:17963000-17963200	Enhancers	Brain Anterior Caudate	brain

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