Variant report

Variant	rs2716019
Chromosome Location	chr4:121119821-121119822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10022765	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10023206	0.89[ASN][1000 genomes]
rs11728754	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11732024	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12508207	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12641594	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1493683	0.80[ASN][1000 genomes]
rs1509002	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2662755	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2662763	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2716003	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2716020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555621	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28562566	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28641772	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28668559	0.86[EUR][1000 genomes]
rs28851301	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28883418	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59648491	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60858956	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6534171	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6829347	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7674837	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7697024	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv1845528	chr4:121034480-121185834	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121118800-121120200	Enhancers	HMEC	breast

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