Variant report

Variant	rs2717003
Chromosome Location	chr2:58143438-58143439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1040224	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1040225	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1356544	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1356545	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1401100	0.82[EUR][1000 genomes]
rs1518393	0.82[EUR][1000 genomes]
rs1518394	0.82[EUR][1000 genomes]
rs1568253	0.83[EUR][1000 genomes]
rs1568254	0.83[EUR][1000 genomes]
rs2139054	0.86[EUR][1000 genomes]
rs2176546	0.83[EUR][1000 genomes]
rs2312141	0.87[EUR][1000 genomes]
rs2465804	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2678881	0.90[EUR][1000 genomes]
rs2678889	0.83[EUR][1000 genomes]
rs2678890	0.83[EUR][1000 genomes]
rs2678891	0.83[EUR][1000 genomes]
rs2678896	0.82[EUR][1000 genomes]
rs2678897	0.81[EUR][1000 genomes]
rs2678901	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2678903	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2678904	0.88[EUR][1000 genomes]
rs2678905	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2678906	0.90[EUR][1000 genomes]
rs2678908	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2678915	0.89[EUR][1000 genomes]
rs2683634	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2717001	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2717002	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2717004	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2717007	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2717015	0.87[EUR][1000 genomes]
rs2717031	0.83[EUR][1000 genomes]
rs2717032	0.83[EUR][1000 genomes]
rs2717035	0.82[EUR][1000 genomes]
rs2717036	0.82[EUR][1000 genomes]
rs2717040	0.81[EUR][1000 genomes]
rs2717041	0.80[EUR][1000 genomes]
rs2717056	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2717063	0.83[EUR][1000 genomes]
rs2717068	0.83[EUR][1000 genomes]
rs28718871	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs908730	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs970941	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58137800-58148000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:58139200-58147800	Weak transcription	Brain Substantia Nigra	brain

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