Variant report

Variant	rs2717359
Chromosome Location	chr7:19087856-19087857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10227439	0.90[AFR][1000 genomes]
rs10252615	0.81[AFR][1000 genomes]
rs2078978	0.87[AFR][1000 genomes]
rs2521722	1.00[AFR][1000 genomes]
rs2521723	0.89[AFR][1000 genomes]
rs2521734	0.81[AFR][1000 genomes]
rs2521737	0.91[AFR][1000 genomes]
rs2717360	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2717361	0.98[AFR][1000 genomes]
rs2717362	0.86[AFR][1000 genomes]
rs2892913	0.80[AFR][1000 genomes]
rs2905459	0.91[AFR][1000 genomes]
rs2906045	0.87[AFR][1000 genomes]
rs429	0.81[AFR][1000 genomes]
rs4383884	0.88[AFR][1000 genomes]
rs60301616	0.90[AFR][1000 genomes]
rs7776577	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19075600-19089400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19082800-19100400	Weak transcription	HSMM	muscle
3	chr7:19085200-19091600	Weak transcription	NHDF-Ad	bronchial
4	chr7:19085400-19089800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:19086200-19101800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:19086600-19100000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links