Variant report

Variant	rs2718103
Chromosome Location	chr7:128811079-128811080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10239495	0.90[AFR][1000 genomes]
rs13225907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13240484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2694579	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2694580	1.00[AMR][1000 genomes]
rs2694581	1.00[AFR][1000 genomes]
rs4731560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953587	0.81[AFR][1000 genomes]
rs968367	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831127	chr7:128716256-128874691	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128807800-128812800	Weak transcription	HSMMtube	muscle
2	chr7:128809600-128815400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:128809600-128817800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:128810000-128813200	Weak transcription	Aorta	Aorta
5	chr7:128810200-128811200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:128810200-128811400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:128810400-128811400	Genic enhancers	GM12878-XiMat	blood
8	chr7:128810400-128814400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:128810600-128812000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:128810600-128814400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:128810800-128814400	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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