Variant report

Variant	rs272217
Chromosome Location	chr6:72344869-72344870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1096051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1096052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11962995	1.00[AMR][1000 genomes]
rs11968859	1.00[AMR][1000 genomes]
rs272215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs272216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs272218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs272235	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs829274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs829277	1.00[AMR][1000 genomes]
rs9446421	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72344800-72345000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links