Variant report

Variant	rs2724942
Chromosome Location	chr15:42318217-42318218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11629515	0.87[CEU][hapmap]
rs11638234	0.81[EUR][1000 genomes]
rs12901016	0.82[EUR][1000 genomes]
rs1622221	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1622949	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1628549	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1668560	0.84[EUR][1000 genomes]
rs1668561	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1668562	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1668563	0.90[ASN][1000 genomes]
rs1668564	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1668565	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1704370	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1704371	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1704373	0.83[EUR][1000 genomes]
rs1704376	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs1823552	0.82[EUR][1000 genomes]
rs2598466	0.82[EUR][1000 genomes]
rs2598467	0.85[EUR][1000 genomes]
rs2665203	0.83[EUR][1000 genomes]
rs2665205	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2665207	0.84[EUR][1000 genomes]
rs2665208	0.85[ASN][1000 genomes]
rs2665210	0.85[EUR][1000 genomes]
rs2665211	0.85[EUR][1000 genomes]
rs2724935	0.84[EUR][1000 genomes]
rs2724939	0.84[EUR][1000 genomes]
rs2724944	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2724945	0.82[EUR][1000 genomes]
rs35670495	0.84[EUR][1000 genomes]
rs6493019	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv569235	chr15:42304628-42326259	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42314000-42322400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:42314800-42319000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:42316800-42319200	Weak transcription	Psoas Muscle	Psoas
4	chr15:42317000-42322400	Weak transcription	Esophagus	oesophagus
5	chr15:42317800-42319200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:42317800-42322000	Weak transcription	NHEK	skin
7	chr15:42318200-42318600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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