Variant report

Variant	rs2724958
Chromosome Location	chr8:4483202-4483203
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1154582	0.86[CEU][hapmap]
rs1155851	0.85[CEU][hapmap]
rs1382256	0.86[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs1478279	0.91[CEU][hapmap];0.83[AMR][1000 genomes]
rs1478280	0.86[CEU][hapmap];0.82[YRI][hapmap]
rs1478281	0.86[CEU][hapmap]
rs1478283	0.87[CEU][hapmap]
rs2616983	0.91[CEU][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2616994	0.82[CEU][hapmap]
rs2616995	0.86[CEU][hapmap]
rs2617000	0.85[CEU][hapmap]
rs2617002	0.87[CEU][hapmap]
rs2617008	0.87[CEU][hapmap]
rs2617009	0.81[CEU][hapmap]
rs2724953	0.86[CEU][hapmap]
rs2724974	0.91[CEU][hapmap]
rs2724975	0.91[CEU][hapmap]
rs2725003	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889960	chr8:4395685-4489552	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv465384	chr8:4413282-4512135	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv609857	chr8:4413282-4512135	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428513	chr8:4435878-4613986	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1844135	chr8:4442963-4602387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2422279	chr8:4458646-4641684	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv465386	chr8:4467334-4676661	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv609861	chr8:4467334-4676661	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv609865	chr8:4473133-4485248	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv517334	chr8:4473133-4489552	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv2829887	chr8:4475968-4484498	Enhancers Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv609866	chr8:4475968-4484498	Enhancers Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv465388	chr8:4475968-4485248	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv609867	chr8:4475968-4485248	Enhancers Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv609868	chr8:4475968-4486561	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	nsv609869	chr8:4477704-4484498	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	nsv609870	chr8:4478988-4485248	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	esv2761196	chr8:4479596-4488884	ZNF genes & repeats Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv609871	chr8:4479807-4485248	Enhancers Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv609872	chr8:4481209-4486561	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv465389	chr8:4481386-4486561	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv609873	chr8:4481386-4486561	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
25	nsv465390	chr8:4481386-4488046	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	nsv609874	chr8:4481386-4488046	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4480000-4494400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:4481400-4494400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:4481800-4484200	Enhancers	Fetal Muscle Leg	muscle

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