Variant report

Variant	rs2725039
Chromosome Location	chr8:4471292-4471293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12334700	0.80[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs12335285	0.89[ASN][1000 genomes]
rs1382250	0.81[ASW][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1382251	1.00[ASW][hapmap];0.80[CEU][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap]
rs1564179	0.90[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs2061750	0.89[CHD][hapmap];0.84[JPT][hapmap]
rs2466731	0.80[CEU][hapmap];0.90[JPT][hapmap]
rs2616969	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs2616973	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2616975	0.84[CHB][hapmap]
rs2616976	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2616978	0.84[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2616979	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs2617104	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs2617105	0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2617109	0.80[CEU][hapmap]
rs2725037	0.80[CEU][hapmap]
rs2725041	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725043	1.00[ASW][hapmap];0.80[CEU][hapmap];0.84[CHD][hapmap]
rs2725044	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs2725046	0.81[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889960	chr8:4395685-4489552	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv465384	chr8:4413282-4512135	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv609857	chr8:4413282-4512135	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428513	chr8:4435878-4613986	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1844135	chr8:4442963-4602387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv889962	chr8:4453036-4480667	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv2422279	chr8:4458646-4641684	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv470173	chr8:4464167-4477529	Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv609860	chr8:4466042-4477529	Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv465386	chr8:4467334-4676661	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv609861	chr8:4467334-4676661	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv470174	chr8:4468173-4477529	Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv609862	chr8:4468173-4477529	Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv609863	chr8:4468173-4480689	Enhancers Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv465387	chr8:4470747-4481209	Active TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	nsv609864	chr8:4470747-4481209	Enhancers Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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