Variant report

Variant	rs2726879
Chromosome Location	chr11:108659177-108659178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108658928..108659997-chr11:108741741..108742558,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2514121	0.87[AFR][1000 genomes]
rs2615719	0.83[AFR][1000 genomes]
rs2615724	0.84[AFR][1000 genomes]
rs2615726	0.95[AFR][1000 genomes]
rs2615751	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108605800-108663800	Weak transcription	K562	blood
2	chr11:108627800-108659400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:108629000-108661800	Weak transcription	Left Ventricle	heart
4	chr11:108644400-108675400	Weak transcription	Primary T cells from cord blood	blood
5	chr11:108651000-108659600	Weak transcription	GM12878-XiMat	blood
6	chr11:108651400-108659200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:108655000-108659600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:108656000-108660600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:108656400-108660400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:108657400-108659400	Weak transcription	Psoas Muscle	Psoas
11	chr11:108657600-108659200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:108657600-108659800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:108657600-108661800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:108657600-108662200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:108657800-108659600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:108657800-108659600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:108657800-108688200	Weak transcription	NHEK	skin
18	chr11:108658000-108659400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:108658200-108659200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:108658200-108659400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:108658200-108659400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:108658200-108659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:108658600-108660600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr11:108658800-108659800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:108658800-108659800	Enhancers	Osteobl	bone
26	chr11:108658800-108660200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:108658800-108660600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr11:108659000-108659800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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