Variant report

Variant	rs272781
Chromosome Location	chr15:53651956-53651957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16965781	1.00[AMR][1000 genomes]
rs16966077	1.00[AMR][1000 genomes]
rs16966080	1.00[AMR][1000 genomes]
rs16966082	1.00[AMR][1000 genomes]
rs16966084	1.00[AMR][1000 genomes]
rs16966104	1.00[AMR][1000 genomes]
rs272788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569918	1.00[AMR][1000 genomes]
rs7168834	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53650800-53652200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:53651000-53652000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:53651600-53652400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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