Variant report

Variant	rs2729392
Chromosome Location	chr11:57205467-57205468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11229028	0.81[EUR][1000 genomes]
rs11828218	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs12422015	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2250887	0.87[EUR][1000 genomes]
rs2439448	0.87[EUR][1000 genomes]
rs2467333	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2511982	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2581924	0.90[EUR][1000 genomes]
rs2581927	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581928	0.87[EUR][1000 genomes]
rs2584858	0.91[EUR][1000 genomes]
rs2729389	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs61886978	0.86[EUR][1000 genomes]
rs7943531	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2729392	TIMM10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57200000-57205600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:57200400-57208000	Weak transcription	Lung	lung
3	chr11:57202000-57210200	Enhancers	Liver	Liver
4	chr11:57202800-57205600	Weak transcription	Esophagus	oesophagus
5	chr11:57203000-57205600	Weak transcription	Fetal Intestine Small	intestine
6	chr11:57203000-57205600	Weak transcription	HepG2	liver
7	chr11:57203000-57205800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:57203800-57206000	Weak transcription	A549	lung
9	chr11:57203800-57211800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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