Variant report

Variant	rs2729764
Chromosome Location	chr11:77021269-77021270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10793246	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899365	0.82[ASN][1000 genomes]
rs10899368	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899369	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899376	0.86[ASN][1000 genomes]
rs11237145	0.81[ASN][1000 genomes]
rs11237146	0.81[ASN][1000 genomes]
rs11237147	0.81[ASN][1000 genomes]
rs11237154	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237173	0.86[ASN][1000 genomes]
rs12287216	0.81[ASN][1000 genomes]
rs1377470	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1377471	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1453343	0.82[ASN][1000 genomes]
rs1540217	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1613357	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1618188	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1620915	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1621624	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628438	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1670451	0.82[ASN][1000 genomes]
rs1670452	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1670453	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1670454	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1670457	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1670460	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17135625	0.83[ASN][1000 genomes]
rs1793466	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1793467	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1793469	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793470	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793476	0.83[EUR][1000 genomes]
rs1793488	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1894214	0.82[ASN][1000 genomes]
rs1894215	0.82[ASN][1000 genomes]
rs1946004	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1946005	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2250639	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2250647	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2298793	0.86[ASN][1000 genomes]
rs2602459	0.84[ASN][1000 genomes]
rs2602464	0.81[ASN][1000 genomes]
rs2602468	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2602469	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2602470	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2602488	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2602489	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725810	0.82[ASN][1000 genomes]
rs2725815	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725816	0.82[ASN][1000 genomes]
rs2725819	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2725826	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725827	0.89[ASN][1000 genomes]
rs2725831	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725832	0.82[ASN][1000 genomes]
rs2729762	0.83[EUR][1000 genomes]
rs2729769	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2844337	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2852385	0.89[ASN][1000 genomes]
rs2853086	0.82[ASN][1000 genomes]
rs2853088	0.82[ASN][1000 genomes]
rs2853090	0.82[ASN][1000 genomes]
rs2853096	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2853103	0.89[ASN][1000 genomes]
rs3018424	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7121984	0.81[ASN][1000 genomes]
rs7938075	0.81[ASN][1000 genomes]
rs9634031	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77015200-77027600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:77020600-77024400	Weak transcription	HSMM	muscle
3	chr11:77020800-77032000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:77020800-77033200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:77021000-77022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:77021000-77022800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:77021000-77024600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:77021000-77032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:77021200-77022800	Weak transcription	NHDF-Ad	bronchial

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