Variant report

Variant	rs2730433
Chromosome Location	chr12:119320710-119320711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10851046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10851047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs10851048	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs11069146	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs12424805	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7315520	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap]
rs7315931	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7966225	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7978942	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7979275	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7979677	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119319200-119321200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:119319600-119321200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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