Variant report

Variant	rs2730442
Chromosome Location	chr12:119313572-119313573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1406451	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1406452	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2178281	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2253853	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2463875	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2698055	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2698058	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2698060	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2698061	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2698070	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2698071	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2698072	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2698073	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2698075	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2698077	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2730432	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2730434	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2730436	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2730438	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2730439	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2730440	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35860164	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4123	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4303287	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4767733	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119312600-119314800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr12:119312800-119313600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr12:119312800-119313600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr12:119313000-119313600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:119313000-119313800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr12:119313000-119315800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:119313200-119313600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:119313400-119314400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr12:119313400-119314400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:119313400-119314400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:119313400-119314600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr12:119313400-119314800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr12:119313400-119314800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:119313400-119314800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:119313400-119315000	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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