Variant report

Variant	rs2730504
Chromosome Location	chr12:73942723-73942724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:73941837..73944242-chr9:86536650..86538183,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10748229	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748230	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748231	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748232	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10785026	0.81[ASN][1000 genomes]
rs10785030	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10879621	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11179673	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11179674	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11179697	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12368237	0.96[ASN][1000 genomes]
rs1443737	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1520552	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1520565	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1520568	0.84[ASN][1000 genomes]
rs1545292	0.95[ASN][1000 genomes]
rs1851041	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1851042	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1915285	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1915286	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2044247	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34249066	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4760887	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4882911	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4882912	0.84[AFR][1000 genomes]
rs6582160	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6582165	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7297256	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7298973	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7301536	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7306348	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7310312	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7316126	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7489254	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7953263	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7955005	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7963550	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7974278	0.95[ASN][1000 genomes]
rs7976937	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7977492	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7978802	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs952523	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs952524	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs965542	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832457	chr12:73784588-74011986	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1043656	chr12:73795943-74341905	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv541536	chr12:73795943-74341905	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv899278	chr12:73841211-73977563	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832458	chr12:73885329-74075491	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1037030	chr12:73898311-74656764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541537	chr12:73898311-74656764	ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1039792	chr12:73932372-74092387	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73941800-73943000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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