Variant report

Variant	rs2731906
Chromosome Location	chr5:36569760-36569761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10061650	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10076624	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10805623	0.92[ASN][1000 genomes]
rs1366636	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2115521	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2562554	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562559	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2562568	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2731901	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2731907	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2731909	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2731920	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9800255	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36569000-36571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:36569200-36570800	Enhancers	Adipose Nuclei	Adipose
3	chr5:36569200-36570800	Enhancers	NHDF-Ad	bronchial
4	chr5:36569200-36571000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:36569200-36571200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:36569200-36571400	Enhancers	HSMM	muscle
7	chr5:36569200-36571400	Enhancers	Osteobl	bone
8	chr5:36569200-36571600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:36569200-36571800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:36569400-36569800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:36569400-36570000	Enhancers	NHEK	skin
12	chr5:36569400-36571000	Enhancers	NH-A	brain
13	chr5:36569600-36570000	Enhancers	HMEC	breast
14	chr5:36569600-36570200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:36569600-36570200	Enhancers	Brain Angular Gyrus	brain
16	chr5:36569600-36570400	Weak transcription	Brain Anterior Caudate	brain
17	chr5:36569600-36570600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:36569600-36571200	Enhancers	Fetal Muscle Leg	muscle
19	chr5:36569600-36571600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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