Variant report

Variant	rs2733255
Chromosome Location	chr1:74367330-74367331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2603530	1.00[AMR][1000 genomes]
rs2603537	1.00[AMR][1000 genomes]
rs2603544	1.00[AMR][1000 genomes]
rs2733254	1.00[AMR][1000 genomes]
rs2733261	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004451	chr1:74107125-74874389	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv534999	chr1:74107125-74874389	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv522147	chr1:74338530-74983835	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1398	chr1:74353390-74398380	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2763561	chr1:74362009-74396896	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74365400-74367400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:74365800-74367600	Weak transcription	Dnd41	blood
3	chr1:74365800-74368800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:74365800-74368800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:74366000-74367400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:74367000-74368400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:74367000-74369000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:74367200-74367400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:74367200-74367800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:74367200-74367800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:74367200-74367800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:74367200-74368000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:74367200-74368000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:74367200-74368200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:74367200-74368600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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