Variant report

Variant	rs2733614
Chromosome Location	chr15:57978012-57978013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57976708..57979222-chr15:57980893..57983839,2	K562	blood:

Variant related genes	Relation type
ENSG00000137878	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10162937	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554025	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554029	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554039	1.00[AMR][1000 genomes]
rs2733600	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2733605	1.00[AMR][1000 genomes]
rs2733609	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57933400-57982600	Weak transcription	Esophagus	oesophagus
2	chr15:57959600-57982600	Weak transcription	Lung	lung
3	chr15:57960800-57985000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:57968200-57983600	Weak transcription	Gastric	stomach
5	chr15:57973000-57984600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:57975600-57982600	Weak transcription	Right Atrium	heart
7	chr15:57975600-57986600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:57975800-57986400	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:57976600-57978400	Genic enhancers	Fetal Heart	heart
10	chr15:57976800-57978400	Enhancers	Fetal Kidney	kidney
11	chr15:57976800-57978400	Enhancers	Fetal Stomach	stomach
12	chr15:57976800-57979200	Enhancers	Aorta	Aorta
13	chr15:57977200-57978400	Enhancers	Fetal Intestine Large	intestine
14	chr15:57977200-57978800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:57977200-57979200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:57977200-57982600	Weak transcription	Adipose Nuclei	Adipose
17	chr15:57977200-57984800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:57977400-57978200	Weak transcription	Right Ventricle	heart
19	chr15:57977400-57982600	Weak transcription	Pancreas	Pancrea
20	chr15:57977600-57978200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:57977600-57978600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:57977600-57978600	Enhancers	Ovary	ovary
23	chr15:57977600-57978800	Enhancers	Osteobl	bone
24	chr15:57977800-57978400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:57977800-57978400	Enhancers	Left Ventricle	heart
26	chr15:57977800-57978400	Flanking Active TSS	NHDF-Ad	bronchial
27	chr15:57978000-57978200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr15:57978000-57978200	Enhancers	Stomach Mucosa	stomach
29	chr15:57978000-57978200	Enhancers	Spleen	Spleen
30	chr15:57978000-57978400	Enhancers	Brain Angular Gyrus	brain
31	chr15:57978000-57978400	Active TSS	Stomach Smooth Muscle	stomach
32	chr15:57978000-57979200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:57978000-57979200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr15:57978000-57979200	Enhancers	Fetal Intestine Small	intestine

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