Variant report

Variant	rs2736176
Chromosome Location	chr6:31587561-31587562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31587425-31589192	K562	blood:	n/a	n/a
2	POLR2A	chr6:31587530-31589245	H1-hESC	embryonic stem cell:	n/a	n/a
3	HEY1	chr6:31587323-31589155	HepG2	liver:	n/a	chr6:31588313-31588328 chr6:31588969-31588984
4	POLR2A	chr6:31587351-31591130	GM12878	blood:	n/a	n/a
5	ZMIZ1	chr6:31587374-31589030	K562	blood:	n/a	n/a
6	CEBPD	chr6:31587381-31589638	K562	blood:	n/a	n/a
7	POLR2A	chr6:31587203-31590940	SK-N-MC	brain:	n/a	n/a
8	ARID3A	chr6:31587433-31588194	K562	blood:	n/a	n/a
9	IRF1	chr6:31587537-31589622	K562	blood:	n/a	chr6:31589359-31589379 chr6:31588253-31588262 chr6:31589175-31589187 chr6:31589172-31589186 chr6:31588199-31588213 chr6:31588129-31588143 chr6:31587881-31587895 chr6:31587584-31587598 chr6:31588411-31588425 chr6:31589176-31589186 chr6:31587585-31587596
10	EP300	chr6:31587396-31588269	GM12878	blood:	n/a	chr6:31587861-31587869 chr6:31588024-31588038
11	POLR2A	chr6:31587131-31589047	K562	blood:	n/a	n/a
12	POLR2A	chr6:31587353-31587576	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr6:31587446-31589559	HUVEC	blood vessel:	n/a	n/a
14	ARID3A	chr6:31587478-31588691	HepG2	liver:	n/a	n/a
15	MAZ	chr6:31587472-31589602	IMR90	lung:	n/a	chr6:31588445-31588455 chr6:31588013-31588023 chr6:31588204-31588214
16	POLR2A	chr6:31587335-31589068	NB4	blood:	n/a	n/a
17	POLR2A	chr6:31587510-31589053	SK-N-MC	brain:	n/a	n/a
18	HEY1	chr6:31587125-31591017	K562	blood:	n/a	chr6:31588313-31588328 chr6:31588969-31588984
19	PML	chr6:31587431-31589192	GM12878	blood:	n/a	n/a
20	JUN	chr6:31587004-31589748	K562	blood:	n/a	chr6:31587856-31587869 chr6:31588931-31588945 chr6:31588001-31588010
21	NFYB	chr6:31587535-31588495	GM12878	blood:	n/a	chr6:31588251-31588266 chr6:31588250-31588262 chr6:31588251-31588266 chr6:31588251-31588265 chr6:31588253-31588263
22	MTA3	chr6:31587330-31589818	GM12878	blood:	n/a	n/a
23	EP300	chr6:31587513-31588517	K562	blood:	n/a	chr6:31588454-31588470 chr6:31588331-31588345 chr6:31588332-31588346 chr6:31588463-31588472 chr6:31588455-31588471 chr6:31587861-31587869 chr6:31588457-31588473 chr6:31588024-31588038
24	TEAD4	chr6:31587224-31590369	K562	blood:	n/a	n/a
25	CREB1	chr6:31587559-31588967	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:31587428-31588324	HepG2	liver:	n/a	n/a
27	POLR2A	chr6:31587236-31589148	Hela-S3	cervix:	n/a	n/a
28	TBP	chr6:31587455-31588651	Hela-S3	cervix:	n/a	n/a
29	TEAD4	chr6:31587385-31588559	HepG2	liver:	n/a	n/a
30	POLR2A	chr6:31587263-31591139	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr6:31587459-31589158	PBDE	blood:	n/a	n/a
32	GTF2F1	chr6:31587428-31588978	K562	blood:	n/a	n/a
33	EP300	chr6:31587483-31588946	K562	blood:	n/a	chr6:31588454-31588470 chr6:31588331-31588345 chr6:31588332-31588346 chr6:31588463-31588472 chr6:31588455-31588471 chr6:31587861-31587869 chr6:31588457-31588473 chr6:31588024-31588038
34	CREB1	chr6:31587539-31588875	H1-hESC	embryonic stem cell:	n/a	n/a
35	SP1	chr6:31587340-31588630	H1-hESC	embryonic stem cell:	n/a	chr6:31587884-31587894 chr6:31588441-31588455 chr6:31588389-31588401 chr6:31588131-31588142 chr6:31587884-31587898 chr6:31588437-31588451 chr6:31587884-31587893 chr6:31588390-31588399 chr6:31587885-31587894 chr6:31587883-31587895 chr6:31587883-31587895 chr6:31588252-31588273 chr6:31588430-31588444 chr6:31588203-31588212 chr6:31587884-31587894 chr6:31587884-31587893
36	TBP	chr6:31587345-31589234	K562	blood:	n/a	n/a
37	POU2F2	chr6:31587553-31588697	GM12891	blood:	n/a	chr6:31587755-31587770 chr6:31588441-31588453 chr6:31588293-31588302 chr6:31588294-31588301 chr6:31587758-31587768 chr6:31587753-31587771 chr6:31588292-31588302 chr6:31587851-31587865 chr6:31588290-31588304 chr6:31588400-31588412 chr6:31587745-31587755 chr6:31588398-31588413 chr6:31587853-31587863 chr6:31587739-31587761 chr6:31587742-31587757 chr6:31587850-31587865 chr6:31588401-31588409 chr6:31588293-31588301 chr6:31587851-31587864 chr6:31587757-31587767 chr6:31587853-31587862 chr6:31587745-31587756 chr6:31587743-31587757 chr6:31588402-31588409 chr6:31588400-31588410 chr6:31588290-31588305 chr6:31587852-31587862 chr6:31588291-31588302 chr6:31588401-31588411 chr6:31587745-31587754 chr6:31588399-31588410 chr6:31587641-31587663 chr6:31588293-31588303 chr6:31588286-31588307 chr6:31587852-31587862 chr6:31588401-31588410 chr6:31587758-31587766 chr6:31588399-31588410 chr6:31588293-31588303 chr6:31587756-31587767 chr6:31588396-31588414 chr6:31587744-31587754 chr6:31587854-31587861 chr6:31587627-31587649 chr6:31587746-31587754 chr6:31587851-31587863 chr6:31587758-31587767 chr6:31588401-31588411 chr6:31587744-31587754 chr6:31588292-31588304 chr6:31587741-31587759 chr6:31588288-31588306 chr6:31587751-31587772 chr6:31587759-31587766 chr6:31587743-31587755 chr6:31587746-31587753
38	JUN	chr6:31587510-31588562	K562	blood:	n/a	chr6:31587856-31587869 chr6:31588001-31588010
39	NFIC	chr6:31587427-31589037	GM12878	blood:	n/a	n/a
40	NR2F2	chr6:31587250-31589368	K562	blood:	n/a	n/a
41	HCFC1	chr6:31587356-31589607	Hela-S3	cervix:	n/a	n/a
42	PML	chr6:31587282-31589811	K562	blood:	n/a	n/a
43	POLR2A	chr6:31587487-31589274	GM12892	blood:	n/a	n/a
44	REST	chr6:31587201-31589978	H1-neurons	neurons:	n/a	chr6:31588428-31588441 chr6:31588789-31588802 chr6:31589059-31589066
45	POLR2A	chr6:31587431-31588307	GM12892	blood:	n/a	n/a
46	POLR2A	chr6:31587251-31587622	Hela-S3	cervix:	n/a	n/a
47	POU2F2	chr6:31587294-31588684	GM12878	blood:	n/a	chr6:31587755-31587770 chr6:31588441-31588453 chr6:31588293-31588302 chr6:31588294-31588301 chr6:31587758-31587768 chr6:31587753-31587771 chr6:31588292-31588302 chr6:31587851-31587865 chr6:31588290-31588304 chr6:31588400-31588412 chr6:31587745-31587755 chr6:31588398-31588413 chr6:31587853-31587863 chr6:31587739-31587761 chr6:31587742-31587757 chr6:31587850-31587865 chr6:31588401-31588409 chr6:31588293-31588301 chr6:31587851-31587864 chr6:31587757-31587767 chr6:31587853-31587862 chr6:31587745-31587756 chr6:31587743-31587757 chr6:31588402-31588409 chr6:31588400-31588410 chr6:31588290-31588305 chr6:31587852-31587862 chr6:31588291-31588302 chr6:31588401-31588411 chr6:31587745-31587754 chr6:31588399-31588410 chr6:31587641-31587663 chr6:31588293-31588303 chr6:31588286-31588307 chr6:31587852-31587862 chr6:31588401-31588410 chr6:31587758-31587766 chr6:31588399-31588410 chr6:31588293-31588303 chr6:31587756-31587767 chr6:31588396-31588414 chr6:31587744-31587754 chr6:31587854-31587861 chr6:31587627-31587649 chr6:31587746-31587754 chr6:31587851-31587863 chr6:31587758-31587767 chr6:31588401-31588411 chr6:31587744-31587754 chr6:31588292-31588304 chr6:31587741-31587759 chr6:31588288-31588306 chr6:31587751-31587772 chr6:31587759-31587766 chr6:31587743-31587755 chr6:31587746-31587753
48	POLR2A	chr6:31587466-31589031	K562	blood:	n/a	n/a
49	CREB1	chr6:31587520-31589014	HepG2	liver:	n/a	n/a
50	CREB1	chr6:31587520-31589142	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31587543-31587593	AG04450	lung:	fetal
2	chr6:31587543-31587593	AG04449	skin:	fetal
3	chr6:31587543-31587593	HAEpiC	amniotic membrane:	n/a
4	chr6:31587543-31587593	NT2-D1	testis:	n/a
5	chr6:31587543-31587593	HUVEC	blood vessel:	n/a
6	chr6:31587543-31587593	AoSMC	blood vessel:	n/a
7	chr6:31587543-31587593	HIPEpiC	eye:	n/a
8	chr6:31587543-31587593	NH-A	brain:	n/a
9	chr6:31587543-31587593	MCF10A-Er-Src	breast:	n/a
10	chr6:31587543-31587593	SK-N-SH	brain:	n/a
11	chr6:31587543-31587593	AG09319	gingival:	n/a
12	chr6:31587543-31587593	K562	blood:	n/a
13	chr6:31587543-31587593	GM12891	blood:	n/a
14	chr6:31587543-31587593	Caco-2	colon:	n/a
15	chr6:31587543-31587593	HNPCEpiC	eye:	n/a
16	chr6:31587543-31587593	H1-hESC	embryonic stem cell:	embryo
17	chr6:31587543-31587593	HEEpiC	esophagus:	n/a
18	chr6:31587543-31587593	CMK	blood:	n/a
19	chr6:31587543-31587593	HCM	heart:	n/a
20	chr6:31587543-31587593	HRE	kidney:	n/a
21	chr6:31587543-31587593	NHBE	bronchial:	n/a
22	chr6:31587543-31587593	BE2_C	brain:	n/a
23	chr6:31587543-31587593	HepG2	liver:	n/a
24	chr6:31587543-31587593	SK-N-MC	brain:	n/a
25	chr6:31587543-31587593	RPTEC	kidney:	n/a
26	chr6:31587543-31587593	NHDF-neo	bronchial:	n/a
27	chr6:31587543-31587593	BJ	skin:	n/a
28	chr6:31587543-31587593	AG09309	skin:	n/a
29	chr6:31587543-31587593	HRCEpiC	kidney:	n/a
30	chr6:31587543-31587593	HMEC	breast:	n/a
31	chr6:31587543-31587593	HRPEpiC	eye:	n/a
32	chr6:31587543-31587593	PrEC	prostate:	n/a
33	chr6:31587543-31587593	PANC-1	pancreas:	n/a
34	chr6:31587543-31587593	PFSK-1	brain:	n/a
35	chr6:31587543-31587593	SAEC	small airway:	n/a
36	chr6:31587543-31587593	SK-N-SH_RA	brain:	n/a
37	chr6:31587543-31587593	GM12878	blood:	n/a
38	chr6:31587543-31587593	NB4	blood:	n/a
39	chr6:31587543-31587593	GM12892	blood:	n/a
40	chr6:31587543-31587593	HCF	heart:	n/a
41	chr6:31587543-31587593	AG10803	skin:	n/a
42	chr6:31587543-31587593	A549	lung:	n/a
43	chr6:31587543-31587593	ovcar-3	ovarian:	n/a
44	chr6:31587543-31587593	U87	brain:	n/a
45	chr6:31587543-31587593	HPAEpiC	pulmonary alveolar:	n/a
46	chr6:31587543-31587593	IMR90	lung:	fetal
47	chr6:31587543-31587593	Hela-S3	cervix:	n/a
48	chr6:31587543-31587593	GM06990	blood:	n/a
49	chr6:31587543-31587593	T-47D	breast:	n/a
50	chr6:31587543-31587593	HL-60	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31512760..31514376-chr6:31584752..31587624,2	MCF-7	breast:
2	chr6:31586339..31592286-chr6:31830032..31833457,6	K562	blood:
3	chr6:31552844..31558545-chr6:31585940..31590373,6	MCF-7	breast:
4	chr6:31586197..31590294-chr6:31618213..31621899,10	MCF-7	breast:
5	chr6:31587256..31589320-chr6:32936886..32939451,2	K562	blood:
6	chr6:31513053..31519210-chr6:31585987..31595406,29	K562	blood:
7	chr6:31506740..31512488-chr6:31586502..31592966,30	K562	blood:
8	chr6:31495666..31498592-chr6:31587530..31589995,2	K562	blood:
9	chr6:31511829..31516829-chr6:31586761..31590434,8	MCF-7	breast:
10	chr6:31587448..31589830-chr6:31773246..31774977,2	MCF-7	breast:
11	chr2:149810063..149810583-chr6:31587476..31588137,2	Hela-S3	cervix:
12	chr2:110371072..110372232-chr6:31587268..31588184,3	Hela-S3	cervix:
13	chr6:31512646..31517552-chr6:31586243..31590655,20	K562	blood:
14	chr6:31553317..31555989-chr6:31586068..31588677,3	K562	blood:
15	chr6:31507058..31511692-chr6:31586700..31590601,11	MCF-7	breast:
16	chr6:31547327..31550393-chr6:31586001..31589795,6	K562	blood:
17	chr6:31507082..31511713-chr6:31583957..31591905,17	MCF-7	breast:
18	chr12:92538993..92539685-chr6:31587488..31588339,2	NB4	blood:
19	chr6:31545892..31550426-chr6:31586652..31590237,7	MCF-7	breast:
20	chr6:31501102..31502891-chr6:31587014..31589467,2	K562	blood:
21	chr6:31586074..31595285-chr6:31626460..31635395,11	MCF-7	breast:
22	chr6:31587256..31589792-chr6:32936886..32939451,3	K562	blood:
23	chr6:31587332..31589434-chr6:31937953..31940828,2	K562	blood:
24	chr6:31586050..31587690-chr6:31877612..31880010,2	K562	blood:
25	chr6:31542598..31545129-chr6:31587096..31589564,4	MCF-7	breast:
26	chr6:30683909..30686000-chr6:31586796..31589035,2	MCF-7	breast:
27	chr6:31506595..31512441-chr6:31585525..31590767,30	K562	blood:
28	chr6:31560247..31562390-chr6:31587195..31589122,2	K562	blood:
29	chr6:31546034..31550400-chr6:31586618..31591027,9	K562	blood:
30	chr6:31462191..31465976-chr6:31584426..31588689,4	K562	blood:
31	chr6:31586933..31588967-chr6:31650467..31653369,2	MCF-7	breast:
32	chr6:31587220..31590773-chr6:31700977..31706290,6	MCF-7	breast:
33	chr1:16482151..16483000-chr6:31587494..31588188,2	Hela-S3	cervix:
34	chr6:31587253..31589657-chr6:31761134..31763419,2	MCF-7	breast:
35	chr6:31462975..31464930-chr6:31587251..31589208,2	MCF-7	breast:

Variant related genes	Relation type
SNORA38	TF binding region
PRRC2A	TF binding region
PRRC2A	CpG island
SNORA38	CpG island
ENSG00000263020	Chromatin interaction
ENSG00000204482	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000254870	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000201680	Chromatin interaction
ENSG00000198142	Chromatin interaction
ENSG00000204516	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000204392	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000227507	Chromatin interaction
ENSG00000245904	Chromatin interaction
ENSG00000232810	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000204428	Chromatin interaction
ENSG00000137337	Chromatin interaction
ENSG00000204498	Chromatin interaction
ENSG00000204511	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000225499	Chromatin interaction
ENSG00000142627	Chromatin interaction
ENSG00000204475	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000133639	Chromatin interaction
ENSG00000186522	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204394	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13716	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2051552	0.84[AMR][1000 genomes]
rs2259571	0.87[AMR][1000 genomes]
rs2260000	0.82[AMR][1000 genomes]
rs2260050	0.87[AMR][1000 genomes]
rs2507957	0.83[AMR][1000 genomes]
rs2736172	0.81[AMR][1000 genomes]
rs2844472	0.82[AMR][1000 genomes]
rs2844477	0.82[AMR][1000 genomes]
rs2857698	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3091280	0.85[AMR][1000 genomes]
rs5872	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs707919	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs755714	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805299	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
2	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
3	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
7	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
9	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
10	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
11	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
12	nsv884418	chr6:31525448-31741078	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
13	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
14	nsv462871	chr6:31575276-31632134	Strong transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	133 gene(s)	inside rSNPs	diseases
15	nsv601942	chr6:31575276-31632134	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	133 gene(s)	inside rSNPs	diseases
16	nsv884419	chr6:31585000-31632651	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	138 gene(s)	inside rSNPs	diseases
17	nsv884420	chr6:31586827-31632651	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	138 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2736176	CSNK2B	Cis_1M	lymphoblastoid	RTeQTL
rs2736176	AIF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31582200-31587800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:31583000-31587600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:31584000-31587800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:31584200-31587600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:31584200-31587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:31584400-31587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:31584600-31587800	Weak transcription	Spleen	Spleen
8	chr6:31587000-31587600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr6:31587200-31587600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr6:31587200-31587600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr6:31587200-31587600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr6:31587200-31587600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr6:31587200-31587600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:31587200-31587600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr6:31587200-31587600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr6:31587200-31587600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:31587200-31587600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:31587200-31587600	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr6:31587200-31587600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr6:31587200-31587600	Flanking Active TSS	Fetal Stomach	stomach
21	chr6:31587200-31587600	Flanking Active TSS	Fetal Thymus	thymus
22	chr6:31587200-31587600	Enhancers	Lung	lung
23	chr6:31587200-31587600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr6:31587200-31587600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr6:31587200-31587600	Flanking Active TSS	Dnd41	blood
26	chr6:31587200-31587600	Flanking Active TSS	HepG2	liver
27	chr6:31587200-31587600	Flanking Active TSS	K562	blood
28	chr6:31587200-31587600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr6:31587200-31587800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr6:31587200-31587800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:31587200-31587800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:31587200-31587800	Active TSS	Right Atrium	heart
33	chr6:31587200-31587800	Flanking Active TSS	HUVEC	blood vessel
34	chr6:31587200-31588600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:31587200-31588800	Active TSS	Adipose Nuclei	Adipose
36	chr6:31587200-31589200	Active TSS	Brain Anterior Caudate	brain
37	chr6:31587200-31589200	Active TSS	Brain Cingulate Gyrus	brain
38	chr6:31587200-31589200	Active TSS	Colon Smooth Muscle	Colon
39	chr6:31587200-31589200	Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr6:31587200-31589200	Active TSS	Thymus	Thymus
41	chr6:31587200-31589400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:31587200-31589400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:31587200-31589400	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr6:31587200-31589400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:31587200-31589400	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr6:31587200-31589400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:31587200-31589400	Active TSS	Brain Hippocampus Middle	brain
48	chr6:31587200-31589400	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr6:31587200-31589400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:31587200-31589400	Active TSS	Duodenum Mucosa	Duodenum

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