Variant report

Variant	rs2736327
Chromosome Location	chr8:11332036-11332037
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11322451..11325795-chr8:11329496..11335044,6	MCF-7	breast:
2	chr8:11331911..11334130-chr8:11408479..11410507,2	MCF-7	breast:
3	chr8:11323210..11326776-chr8:11330455..11332610,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154319	Chromatin interaction
ENSG00000269954	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1478899	1.00[CHB][hapmap]
rs17153343	1.00[CHB][hapmap]
rs2736324	1.00[JPT][hapmap]
rs7005030	1.00[CHB][hapmap]
rs7007575	0.87[EUR][1000 genomes]
rs717717	1.00[CHB][hapmap]
rs899364	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1030756	chr8:11292073-11332782	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2762725	chr8:11322997-11350721	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11325200-11335000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:11330200-11333600	Enhancers	Stomach Mucosa	stomach
3	chr8:11330400-11332600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr8:11330400-11332800	Enhancers	Pancreas	Pancrea
5	chr8:11330800-11332200	Weak transcription	Lung	lung
6	chr8:11331000-11332800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:11331000-11332800	Enhancers	Liver	Liver
8	chr8:11331000-11334000	Enhancers	Placenta	Placenta
9	chr8:11331200-11332200	Weak transcription	Fetal Brain Male	brain
10	chr8:11331200-11332400	Weak transcription	Gastric	stomach
11	chr8:11331600-11332200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:11331600-11332200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:11331600-11332200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:11331600-11332200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:11331600-11332200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:11331600-11332200	Flanking Active TSS	A549	lung
17	chr8:11331600-11332400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:11331600-11332400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:11331600-11332400	Enhancers	Hela-S3	cervix
20	chr8:11331600-11332600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr8:11331600-11332600	Enhancers	Esophagus	oesophagus
22	chr8:11331600-11332600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr8:11331600-11332800	Enhancers	HMEC	breast
24	chr8:11331600-11332800	Enhancers	NHLF	lung
25	chr8:11331600-11333600	Enhancers	HSMMtube	muscle
26	chr8:11331800-11332200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:11331800-11332200	Enhancers	Brain Anterior Caudate	brain
28	chr8:11331800-11332200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr8:11331800-11332200	Flanking Active TSS	HSMM	muscle
30	chr8:11331800-11332200	Flanking Active TSS	NH-A	brain
31	chr8:11331800-11332400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:11331800-11332600	Enhancers	H9 Cell Line	embryonic stem cell
33	chr8:11331800-11332600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr8:11331800-11332600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:11331800-11332600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:11331800-11332600	Enhancers	Brain Hippocampus Middle	brain
37	chr8:11331800-11332600	Enhancers	Fetal Brain Female	brain
38	chr8:11331800-11332600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr8:11331800-11332600	Enhancers	NHDF-Ad	bronchial
40	chr8:11331800-11332600	Flanking Active TSS	NHEK	skin
41	chr8:11331800-11332600	Flanking Active TSS	Osteobl	bone
42	chr8:11331800-11332800	Enhancers	HUVEC	blood vessel
43	chr8:11331800-11333000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr8:11332000-11332200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:11332000-11332200	Bivalent Enhancer	HepG2	liver
46	chr8:11332000-11332400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr8:11332000-11332400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr8:11332000-11332400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr8:11332000-11332400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr8:11332000-11332600	Enhancers	Fetal Lung	lung

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