Variant report

Variant	rs2737172
Chromosome Location	chr1:186480868-186480869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16825604	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72713770	1.00[AFR][1000 genomes]
rs72721529	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv832059	chr1:186464932-186639125	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186470200-186493200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:186475200-186491600	Weak transcription	Brain Anterior Caudate	brain
3	chr1:186475400-186481600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:186479000-186492600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:186480400-186481000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:186480400-186482200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:186480400-186482600	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:186480600-186481000	Enhancers	A549	lung
9	chr1:186480600-186482400	Enhancers	Primary B cells from cord blood	blood
10	chr1:186480800-186481000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:186480800-186481800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:186480800-186481800	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:186480800-186481800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:186480800-186482000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr1:186480800-186482200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:186480800-186482200	Enhancers	GM12878-XiMat	blood
17	chr1:186480800-186482400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:186480800-186483000	Enhancers	Stomach Mucosa	stomach
19	chr1:186480800-186483800	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links