Variant report

Variant	rs274003
Chromosome Location	chr7:137641123-137641124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137617208..137619584-chr7:137640334..137642148,2	MCF-7	breast:
2	chr7:137635412..137637600-chr7:137639096..137641353,3	MCF-7	breast:
3	chr7:137636438..137645214-chr7:137681826..137688964,19	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182158	Chromatin interaction
ENSG00000122787	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs110595	0.81[ASN][1000 genomes]
rs112417	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273975	0.86[JPT][hapmap]
rs273977	0.90[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273978	0.93[JPT][hapmap]
rs273979	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs273980	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs273981	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273983	0.93[JPT][hapmap]
rs273984	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273985	0.81[JPT][hapmap]
rs273986	0.81[ASN][1000 genomes]
rs273987	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs273988	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273989	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273990	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273991	0.90[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273992	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs273994	0.93[JPT][hapmap]
rs273995	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs273996	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs273998	0.93[JPT][hapmap]
rs274000	0.93[JPT][hapmap]
rs274001	0.84[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs274002	0.89[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs274004	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274005	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs274008	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs274009	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs274010	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9886131	0.85[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr7:137622000-137643000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:137622200-137643200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:137626000-137646200	Weak transcription	HMEC	breast
5	chr7:137629400-137649600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:137631800-137643000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:137633200-137641400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr7:137634800-137644200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:137635200-137663400	Weak transcription	Primary B cells from cord blood	blood
10	chr7:137635400-137644200	Weak transcription	Aorta	Aorta
11	chr7:137635600-137643000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:137635600-137650800	Weak transcription	Primary T cells from cord blood	blood
13	chr7:137636000-137650800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:137636200-137650600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:137637000-137641200	Enhancers	NHLF	lung
16	chr7:137637000-137644400	Enhancers	NHDF-Ad	bronchial
17	chr7:137637000-137644600	Genic enhancers	HepG2	liver
18	chr7:137637400-137641400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:137637400-137642200	Weak transcription	Lung	lung
20	chr7:137637400-137642800	Weak transcription	Esophagus	oesophagus
21	chr7:137637400-137646800	Weak transcription	Spleen	Spleen
22	chr7:137637600-137644000	Enhancers	Rectal Smooth Muscle	rectum
23	chr7:137637800-137641600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr7:137638000-137642200	Enhancers	Left Ventricle	heart
25	chr7:137638200-137641400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:137638200-137642800	Enhancers	Liver	Liver
27	chr7:137638200-137644000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr7:137638600-137642200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:137638600-137642800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr7:137638800-137643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:137638800-137644800	Enhancers	Colon Smooth Muscle	Colon
32	chr7:137639000-137642600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:137639000-137647200	Weak transcription	NHEK	skin
34	chr7:137639000-137654800	Weak transcription	Brain Angular Gyrus	brain
35	chr7:137639200-137641200	Weak transcription	Gastric	stomach
36	chr7:137639200-137642600	Enhancers	A549	lung
37	chr7:137639200-137642800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:137639200-137643800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:137639200-137646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:137639200-137650600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:137639400-137641400	Genic enhancers	Fetal Muscle Leg	muscle
42	chr7:137639400-137643000	Enhancers	Psoas Muscle	Psoas
43	chr7:137639400-137643600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:137639400-137652000	Weak transcription	Colonic Mucosa	Colon
45	chr7:137639400-137655000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:137639600-137641200	Weak transcription	Stomach Mucosa	stomach
47	chr7:137639600-137641400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:137639600-137641800	Weak transcription	Brain Anterior Caudate	brain
49	chr7:137639600-137642400	Weak transcription	HUVEC	blood vessel
50	chr7:137639600-137642400	Weak transcription	NH-A	brain

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