Variant report

Variant	rs2740518
Chromosome Location	chr13:50762945-50762946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:50761279..50763703-chr13:50765539..50767086,2	MCF-7	breast:
2	chr13:50697624..50699348-chr13:50762880..50765509,2	K562	blood:
3	chr13:50760379..50762064-chr13:50762698..50765040,2	MCF-7	breast:
4	chr13:50702118..50703932-chr13:50761814..50763532,2	K562	blood:
5	chr13:50760751..50763026-chr13:50764373..50766743,2	K562	blood:
6	chr13:50760570..50765179-chr13:50765243..50769828,5	K562	blood:
7	chr13:50696783..50699348-chr13:50762880..50765509,3	K562	blood:
8	chr13:50741835..50744633-chr13:50762704..50764453,2	K562	blood:

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1007852	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1359613	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1965800	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1975371	0.85[EUR][1000 genomes]
rs1985704	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2066625	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2066626	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2066627	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2066632	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066634	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2580184	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2687938	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2740516	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2740520	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2765756	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2765762	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2812228	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1041501	chr13:50683189-50795195	Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv561631	chr13:50761619-50846748	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50760400-50764000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:50760600-50789200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:50761000-50766400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:50761000-50766600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:50761200-50763600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr13:50761200-50766600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:50761200-50776400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:50761400-50766400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr13:50761800-50764000	Enhancers	K562	blood
10	chr13:50762200-50763000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:50762200-50763400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:50762200-50763400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:50762400-50763400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:50762600-50763000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:50762600-50763200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:50762600-50763200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:50762600-50763600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr13:50762600-50765000	Enhancers	HepG2	liver
19	chr13:50762800-50763000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:50762800-50763000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr13:50762800-50766400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links