Variant report

Variant	rs2740796
Chromosome Location	chr8:91927423-91927424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91926255..91928401-chr8:91959261..91961573,2	MCF-7	breast:
2	chr8:91655180..91661938-chr8:91924192..91929884,17	MCF-7	breast:
3	chr8:91802857..91805605-chr8:91925731..91928669,2	MCF-7	breast:
4	chr8:91649829..91653898-chr8:91923286..91927799,5	MCF-7	breast:
5	chr8:91763941..91769111-chr8:91924081..91929908,10	MCF-7	breast:
6	chr8:91888393..91905767-chr8:91919159..91931807,48	MCF-7	breast:
7	chr16:4421891..4423976-chr8:91926767..91928729,2	MCF-7	breast:
8	chr8:91926081..91927593-chr8:91931069..91933151,2	K562	blood:
9	chr8:91890467..91893140-chr8:91927359..91929022,2	MCF-7	breast:
10	chr8:91781643..91786719-chr8:91923582..91929024,8	MCF-7	breast:
11	chr8:91681994..91684402-chr8:91926496..91928050,2	MCF-7	breast:
12	chr8:91867431..91874888-chr8:91920306..91928900,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000123119	Chromatin interaction
ENSG00000180694	Chromatin interaction
ENSG00000254251	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1002583	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10106570	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1038545	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1038546	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055146	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10808632	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808633	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808634	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1159962	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1160329	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386113	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471847	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486464	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1486468	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552397	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1825691	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1973282	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1973283	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019889	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2035595	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054806	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2101378	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631007	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631008	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631011	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2631013	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2631015	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2631018	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631023	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2631025	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2631026	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631029	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631031	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2631032	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2677572	0.95[ASN][1000 genomes]
rs2677574	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677581	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740772	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2740773	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2740774	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2740775	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740778	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740779	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740780	0.95[ASN][1000 genomes]
rs2740781	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2740784	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2740785	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2740788	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2740791	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740798	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2740801	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2740802	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28404401	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28618232	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28675099	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35972814	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4529427	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72664410	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7818187	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7831333	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7832881	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7837376	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs931336	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs931337	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs978559	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs978560	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs997898	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs997899	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv891185	chr8:91923776-92056288	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91916400-91953000	Weak transcription	Aorta	Aorta
2	chr8:91923200-91928000	Weak transcription	Left Ventricle	heart
3	chr8:91925400-91928800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:91925600-91931800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:91926200-91930600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:91926200-91931000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:91926200-91931600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:91926200-91931800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:91926200-91931800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:91926400-91927600	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:91926400-91927800	Weak transcription	Ovary	ovary
12	chr8:91926400-91928800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:91926400-91929000	Weak transcription	Brain Anterior Caudate	brain
14	chr8:91926400-91931600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:91926400-91931800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:91926400-91948800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:91926600-91928800	Weak transcription	Brain Substantia Nigra	brain
18	chr8:91926600-91948400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr8:91926800-91927800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:91926800-91928800	Weak transcription	Brain Angular Gyrus	brain
21	chr8:91926800-91929000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:91926800-91948400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr8:91927000-91929000	Weak transcription	Brain Hippocampus Middle	brain

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