Variant report

Variant	rs2744295
Chromosome Location	chr6:25297119-25297120
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1880271	0.92[AFR][1000 genomes]
rs2690116	0.83[AFR][1000 genomes]
rs2690122	0.91[AFR][1000 genomes]
rs2690124	0.91[AFR][1000 genomes]
rs2744292	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv883484	chr6:25237288-25303100	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25280800-25302800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:25286800-25300800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:25288600-25301200	Weak transcription	Brain Anterior Caudate	brain
4	chr6:25289000-25298600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:25289000-25300600	Weak transcription	Pancreas	Pancrea
6	chr6:25290400-25313400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:25292200-25303000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:25292400-25301000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:25293000-25301200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:25293200-25301200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:25293800-25298000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:25294200-25311200	Weak transcription	Lung	lung
13	chr6:25294600-25297600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:25294600-25301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:25295000-25297800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:25295400-25297400	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:25295600-25297600	Enhancers	NHLF	lung
18	chr6:25295600-25299400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:25295800-25297200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:25295800-25297400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:25295800-25297800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:25295800-25297800	Enhancers	Thymus	Thymus
23	chr6:25295800-25298000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:25295800-25298000	Enhancers	Fetal Intestine Small	intestine
25	chr6:25295800-25298000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr6:25295800-25298000	Enhancers	Small Intestine	intestine
27	chr6:25295800-25298000	Enhancers	NHDF-Ad	bronchial
28	chr6:25295800-25298200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:25295800-25298200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:25295800-25298200	Enhancers	Fetal Heart	heart
31	chr6:25295800-25298200	Enhancers	HSMMtube	muscle
32	chr6:25295800-25299200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:25296000-25297200	Enhancers	Primary B cells from peripheral blood	blood
34	chr6:25296000-25297200	Enhancers	Primary T cells from cord blood	blood
35	chr6:25296000-25297400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:25296000-25297600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:25296000-25297600	Enhancers	Aorta	Aorta
38	chr6:25296000-25297800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:25296000-25297800	Enhancers	Fetal Thymus	thymus
40	chr6:25296000-25298000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:25296000-25299200	Enhancers	Fetal Lung	lung
42	chr6:25296000-25301200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:25296200-25297600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:25296400-25297400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:25296400-25297400	Enhancers	Placenta	Placenta
46	chr6:25296400-25297400	Enhancers	Gastric	stomach
47	chr6:25296400-25297400	Enhancers	Left Ventricle	heart
48	chr6:25296400-25298000	Enhancers	Ovary	ovary
49	chr6:25296400-25298000	Enhancers	Stomach Mucosa	stomach
50	chr6:25296400-25298200	Enhancers	Primary hematopoietic stem cells	blood

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