Variant report

Variant	rs2744582
Chromosome Location	chr6:24502498-24502499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24497206..24500144-chr6:24502439..24504926,2	MCF-7	breast:
2	chr6:24500345..24502896-chr6:24503949..24507789,3	K562	blood:
3	chr6:24501950..24504641-chr6:24720366..24723050,2	MCF-7	breast:
4	chr6:24493044..24496959-chr6:24499053..24507631,9	MCF-7	breast:
5	chr6:24478986..24481425-chr6:24502139..24505080,2	K562	blood:
6	chr6:24491857..24498070-chr6:24502018..24507031,7	MCF-7	breast:
7	chr6:24432825..24434367-chr6:24500694..24503119,2	K562	blood:

Variant related genes	Relation type
ENSG00000112294	Chromatin interaction
ENSG00000112293	Chromatin interaction
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2010190	0.91[ASN][1000 genomes]
rs2744551	0.80[ASN][1000 genomes]
rs2744554	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2744572	0.90[ASN][1000 genomes]
rs2744585	0.87[ASN][1000 genomes]
rs2744588	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2760137	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2760138	0.83[AMR][1000 genomes]
rs2760146	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2760153	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2793431	1.00[AFR][1000 genomes]
rs2793445	0.80[ASN][1000 genomes]
rs2817204	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2817215	0.94[ASN][1000 genomes]
rs2817217	0.92[ASN][1000 genomes]
rs2817218	0.92[ASN][1000 genomes]
rs2817226	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2817227	0.80[ASN][1000 genomes]
rs2817231	1.00[AFR][1000 genomes]
rs2817247	0.82[ASN][1000 genomes]
rs2817248	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs941437	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv519552	chr6:24451256-24524704	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv883480	chr6:24481299-24507519	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv965688	chr6:24498821-24503046	Strong transcription Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24495800-24517800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:24496000-24513000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24496000-24517800	Weak transcription	Spleen	Spleen
4	chr6:24496000-24534200	Weak transcription	Gastric	stomach
5	chr6:24496000-24538000	Weak transcription	Esophagus	oesophagus
6	chr6:24496200-24503000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:24496200-24503400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:24496200-24503600	Weak transcription	Aorta	Aorta
9	chr6:24496200-24503600	Weak transcription	Ovary	ovary
10	chr6:24496200-24503600	Weak transcription	Pancreas	Pancrea
11	chr6:24496200-24503800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:24496200-24503800	Weak transcription	Fetal Brain Female	brain
13	chr6:24496200-24504000	Weak transcription	Fetal Lung	lung
14	chr6:24496200-24505000	Weak transcription	Right Ventricle	heart
15	chr6:24496200-24506200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:24496200-24526400	Weak transcription	Right Atrium	heart
17	chr6:24496200-24527800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:24496200-24534200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:24496200-24535000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:24496200-24536200	Weak transcription	Psoas Muscle	Psoas
21	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
22	chr6:24496400-24503400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:24496400-24503400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:24496400-24503600	Weak transcription	Fetal Kidney	kidney
25	chr6:24496400-24503800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:24496400-24517200	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:24496400-24532200	Weak transcription	Brain Germinal Matrix	brain
28	chr6:24496600-24502800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:24496600-24503200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:24496600-24503600	Weak transcription	Brain Anterior Caudate	brain
31	chr6:24496600-24503600	Weak transcription	Left Ventricle	heart
32	chr6:24496600-24504000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:24496600-24505000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:24496600-24507000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:24496600-24507400	Weak transcription	Fetal Brain Male	brain
36	chr6:24496600-24512400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:24496800-24503400	Weak transcription	Adipose Nuclei	Adipose
38	chr6:24496800-24503600	Weak transcription	Brain Angular Gyrus	brain
39	chr6:24496800-24503600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:24496800-24507600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:24496800-24508800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:24496800-24517600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:24496800-24522800	Weak transcription	Lung	lung
44	chr6:24496800-24532400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:24497000-24507200	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:24497000-24528200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:24497400-24502800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:24497400-24522400	Weak transcription	K562	blood
49	chr6:24497800-24503200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:24497800-24503800	Weak transcription	Primary B cells from cord blood	blood

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