Variant report

Variant	rs2745425
Chromosome Location	chr6:133002505-133002506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11154689	1.00[ASN][1000 genomes]
rs17061798	1.00[ASN][1000 genomes]
rs17606700	1.00[ASN][1000 genomes]
rs45530734	1.00[ASN][1000 genomes]
rs45562238	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2745425	VNN1	cis	Whole Blood	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132997400-133003000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:132998200-133003000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:132998400-133003000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:132999600-133003200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:133001000-133004600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:133001200-133003400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:133001400-133004200	Weak transcription	HSMM	muscle
8	chr6:133001800-133004800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:133002200-133004200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:133002200-133014600	Strong transcription	Liver	Liver
11	chr6:133002400-133005600	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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