Variant report

Variant	rs2745905
Chromosome Location	chr11:34393968-34393969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34393782..34397128-chr11:34486521..34490392,3	K562	blood:
2	chr11:34393729..34396831-chr11:34458859..34462084,3	K562	blood:
3	chr11:34393218..34394851-chr11:34396567..34398497,2	K562	blood:
4	chr11:34391759..34394626-chr11:34402095..34405297,3	MCF-7	breast:
5	chr11:34391709..34394417-chr11:34464245..34466019,2	K562	blood:

Variant related genes	Relation type
ENSG00000121691	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2745924	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61880787	0.80[ASN][1000 genomes]
rs61880808	0.80[ASN][1000 genomes]
rs7927163	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34392400-34394000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:34392600-34394000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:34392600-34394000	Enhancers	HSMM	muscle
4	chr11:34392600-34394000	Enhancers	NH-A	brain
5	chr11:34392600-34394000	Enhancers	NHEK	skin
6	chr11:34392600-34394000	Enhancers	NHLF	lung
7	chr11:34392800-34394000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:34392800-34394000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:34392800-34394000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:34392800-34394000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:34392800-34394000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:34392800-34394000	Enhancers	HMEC	breast
13	chr11:34393000-34394000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr11:34393000-34394000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:34393400-34394000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:34393400-34394000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:34393400-34394000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:34393400-34394000	Enhancers	Hela-S3	cervix
19	chr11:34393400-34398000	Weak transcription	Liver	Liver
20	chr11:34393600-34394000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:34393600-34394000	Enhancers	K562	blood
22	chr11:34393600-34394000	Enhancers	Osteobl	bone
23	chr11:34393800-34394000	Enhancers	A549	lung

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