Variant report

Variant	rs2745906
Chromosome Location	chr11:34392928-34392929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34391759..34394626-chr11:34402095..34405297,3	MCF-7	breast:
2	chr11:34390392..34393153-chr11:34459293..34461450,2	K562	blood:
3	chr11:34391709..34394417-chr11:34464245..34466019,2	K562	blood:

Variant related genes	Relation type
ENSG00000121691	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2611117	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611133	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611147	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611149	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611150	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611152	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745903	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2745908	0.87[EUR][1000 genomes]
rs2745909	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2745910	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745911	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745912	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745913	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745915	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745921	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745922	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745923	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746152	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746153	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746163	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746165	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34065514	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756137	0.93[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34392200-34393000	Enhancers	Hela-S3	cervix
2	chr11:34392200-34393800	Enhancers	HepG2	liver
3	chr11:34392400-34393200	Enhancers	Osteobl	bone
4	chr11:34392400-34393400	Enhancers	NHDF-Ad	bronchial
5	chr11:34392400-34394000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:34392600-34393000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:34392600-34393400	Enhancers	Liver	Liver
8	chr11:34392600-34393800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:34392600-34393800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:34392600-34394000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:34392600-34394000	Enhancers	HSMM	muscle
12	chr11:34392600-34394000	Enhancers	NH-A	brain
13	chr11:34392600-34394000	Enhancers	NHEK	skin
14	chr11:34392600-34394000	Enhancers	NHLF	lung
15	chr11:34392800-34393000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:34392800-34393000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr11:34392800-34393000	Flanking Active TSS	HSMMtube	muscle
18	chr11:34392800-34393000	Enhancers	K562	blood
19	chr11:34392800-34393200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr11:34392800-34393400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:34392800-34393400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:34392800-34393400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:34392800-34393400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:34392800-34393400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:34392800-34393400	Flanking Active TSS	A549	lung
26	chr11:34392800-34393600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:34392800-34393600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:34392800-34393600	Enhancers	Adipose Nuclei	Adipose
29	chr11:34392800-34393800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:34392800-34393800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:34392800-34393800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:34392800-34394000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:34392800-34394000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:34392800-34394000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr11:34392800-34394000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:34392800-34394000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:34392800-34394000	Enhancers	HMEC	breast

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