Variant report

Variant	rs274625
Chromosome Location	chr7:86276142-86276143
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86262421..86264345-chr7:86274869..86277224,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12333697	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs200839	0.84[ASN][1000 genomes]
rs2107691	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299212	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2463398	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs274613	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs274614	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs274616	0.84[ASN][1000 genomes]
rs274617	0.84[ASN][1000 genomes]
rs274618	0.84[ASN][1000 genomes]
rs274620	0.83[ASN][1000 genomes]
rs274621	0.83[ASN][1000 genomes]
rs274622	0.83[ASN][1000 genomes]
rs274623	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs274624	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs274628	0.81[ASN][1000 genomes]
rs274629	0.81[ASN][1000 genomes]
rs274630	0.81[ASN][1000 genomes]
rs274631	0.81[ASN][1000 genomes]
rs274633	0.84[ASN][1000 genomes]
rs274634	0.84[ASN][1000 genomes]
rs274636	0.84[ASN][1000 genomes]
rs701334	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701335	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701336	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701337	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs701338	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724225	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs724226	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7794681	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs802420	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs802421	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802423	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802426	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs802427	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802428	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802430	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802431	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802433	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802434	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802435	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802436	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802437	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802438	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802440	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802442	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs802443	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802445	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802446	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802447	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802449	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs802450	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802456	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs802459	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs802465	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802466	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs802475	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86272600-86277200	Active TSS	Brain Hippocampus Middle	brain
2	chr7:86272600-86277200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:86272600-86277400	Active TSS	Brain Angular Gyrus	brain
4	chr7:86272600-86277800	Active TSS	Brain Cingulate Gyrus	brain
5	chr7:86272600-86278000	Active TSS	Brain Anterior Caudate	brain
6	chr7:86272600-86278000	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr7:86274600-86277600	Active TSS	Fetal Brain Female	brain
8	chr7:86274600-86283200	Weak transcription	Right Atrium	heart
9	chr7:86275400-86276400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:86275400-86277000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:86275400-86283200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:86275800-86276600	Weak transcription	Fetal Brain Male	brain
13	chr7:86276000-86276600	Enhancers	Brain Substantia Nigra	brain
14	chr7:86276000-86276800	Weak transcription	Brain Germinal Matrix	brain
15	chr7:86276000-86278400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:86276000-86278400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:86276000-86278400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:86276000-86278800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links