Variant report

Variant	rs2746316
Chromosome Location	chr6:80380955-80380956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80246210..80248079-chr6:80378747..80381215,2	K562	blood:
2	chr6:80380336..80382871-chr6:80384320..80385931,2	K562	blood:

Variant related genes	Relation type
ENSG00000135338	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1883878	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2473826	0.89[EUR][1000 genomes]
rs2746314	0.88[EUR][1000 genomes]
rs2746317	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2812703	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2812708	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2812712	0.89[EUR][1000 genomes]
rs2812713	0.89[EUR][1000 genomes]
rs980225	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1018318	chr6:80241029-80465282	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80366200-80384000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:80372600-80382600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:80373400-80412400	Weak transcription	Fetal Brain Male	brain
4	chr6:80374000-80381200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:80374000-80381600	Weak transcription	Fetal Brain Female	brain
6	chr6:80374400-80381400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:80374400-80381400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:80374400-80381400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:80374400-80383600	Weak transcription	Right Ventricle	heart
10	chr6:80374400-80386800	Weak transcription	Right Atrium	heart
11	chr6:80375800-80383600	Weak transcription	Fetal Kidney	kidney
12	chr6:80376000-80381400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:80376000-80385000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:80376200-80381200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:80376200-80381400	Weak transcription	HSMM	muscle
16	chr6:80376200-80384200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:80376400-80381000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:80376400-80381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:80376400-80396200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:80376400-80402000	Weak transcription	Brain Substantia Nigra	brain
21	chr6:80376600-80383200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:80377000-80385800	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:80377800-80382800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:80378000-80381000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr6:80378000-80394400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:80378200-80381400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:80378200-80382400	Enhancers	Fetal Lung	lung
28	chr6:80378200-80383000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:80378200-80385600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:80378200-80387000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:80378200-80396000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:80378200-80405000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:80378400-80383400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:80378400-80383400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:80378400-80385600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:80378400-80403800	Weak transcription	Esophagus	oesophagus
37	chr6:80378600-80383400	Weak transcription	Adipose Nuclei	Adipose
38	chr6:80379000-80383800	Enhancers	Fetal Intestine Small	intestine
39	chr6:80379200-80382400	Enhancers	Stomach Mucosa	stomach
40	chr6:80379200-80382800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr6:80379400-80381000	Enhancers	Duodenum Mucosa	Duodenum
42	chr6:80379400-80381000	Enhancers	Fetal Stomach	stomach
43	chr6:80379400-80382400	Enhancers	Fetal Intestine Large	intestine
44	chr6:80379600-80381200	Enhancers	HUVEC	blood vessel
45	chr6:80379600-80382800	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr6:80379600-80383800	Enhancers	HepG2	liver
47	chr6:80379800-80382600	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr6:80379800-80382800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:80379800-80382800	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr6:80380000-80382400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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