Variant report

Variant	rs2747498
Chromosome Location	chr6:15136808-15136809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2253602	0.81[CHD][hapmap]
rs2747499	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2791622	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15133600-15137400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:15135200-15137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15135400-15137400	Weak transcription	HMEC	breast
4	chr6:15135600-15137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15135600-15137200	Weak transcription	NHEK	skin
6	chr6:15135800-15137600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:15136200-15137600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:15136400-15137000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:15136400-15137000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:15136600-15138400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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